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## name.milesparker.epi.plague
Class Epidemic3D

    java.lang.Object
      org.ascape.model.AscapeObject
          org.ascape.model.Agent
              org.ascape.model.LocatedAgent
                  org.ascape.model.Cell
                      org.ascape.model.CellOccupant
                          org.ascape.model.Scape
                              name.milesparker.epi.plague.Epidemic
                                  name.milesparker.epi.plague.Epidemic3D

All Implemented Interfaces:
  java.io.Serializable, java.lang.Cloneable, java.lang.Iterable, java.util.Collection, java.util.EventListener, ControlListener, ScapeListener, Location, Node, SpaceContext, HasName, RandomFunctions, IGraphicsAdapted

    public class Epidemic3D

extends Epidemic

Epidemic Java Implementation. A simple model of epidemic dynamics. We define individual agents with different disease states. The progression of disease moves from succeptible to exposed to infectious (either symptomatic or asymptomatic) to some outcome state. Agents can transmit infection to their immediate neighbors. For some background on the general approach, see Joshua M. Epstein. "Generative Social Science". 2006. Princeton. Copyright 2009, Miles Parker. Released under Eclipse Public License. All uses should be attributed. Generated by AMF for model: EpidemicPlague.metaabm in project: org.eclipse.amp.amf.examples.escape

See Also:
  Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.ascape.model.Scape
`Scape.ConditionalIterator, Scape.DrawFeatureObservable`

Field Summary

Fields inherited from class org.ascape.model.Scape
`AGENT_ORDER, agentsPerIteration, ALL_AGENTS, CLEAR_STATS_RULE, COLLECT_STATS_RULE, COMPARE_ORDERED_QUALIFIERS, COMPLETE_TOUR, copyrightAndCredits, CREATE_GRAPHIC_VIEW_RULE, CREATE_RULE, CREATE_SCAPE_RULE, CREATE_VIEW_RULE, EXECUTE_RULES_RULE, INITIAL_RULES_RULE, initialRules, prototypeAgent, REPEATED_DRAW, RULE_ORDER, version`

Fields inherited from class org.ascape.model.CellOccupant
`PLAY_HOST_RULE, RANDOM_WALK_AVAILABLE_RULE`

Fields inherited from class org.ascape.model.Cell
`CALCULATE_NEIGHBORS_RULE, neighbors, PLAY_NEIGHBORS_RULE, PLAY_RANDOM_NEIGHBOR_RULE`

Fields inherited from class org.ascape.model.LocatedAgent
`agentSize, coordinate, MOVE_RANDOM_LOCATION_RULE, RANDOM_WALK_RULE, thisUpdate`

Fields inherited from class org.ascape.model.Agent
`DEATH_RULE, FISSIONING_RULE, FORCE_DIE_RULE, FORCE_FISSION_RULE, FORCE_MOVE_RULE, INITIALIZE_RULE, ITERATE_AND_UPDATE_RULE, ITERATE_RULE, METABOLISM_RULE, MOVEMENT_RULE, PLAY_OTHER, UPDATE_RULE`

Fields inherited from class org.ascape.model.AscapeObject
`ARBITRARY_SEED, name, PLATFORM_DEFAULT_COLOR, scape`

Constructor Summary
`Epidemic3D()`

Method Summary
`void` | `createGraphicViews()`

Methods inherited from class name.milesparker.epi.plague.Epidemic
`calculateTimeStep, clone, create2DViews, createChartViews, createFleaPrototype, createGraphViews, createIndividualPrototype, createRatPrototype, createScape, getCaseMortalityRate, getChildren, getCity, getCityDimensions, getCityHeight, getCityWidth, getFleaCount, getFleaRange, getFleaScape, getGraphicsAdapter, getIndividualCount, getIndividualScape, getInitialInfectionProbability, getMaxContactTransmissionProbability, getMaxPeriodAsymptomInfection, getMaxPeriodExposure, getMaxPeriodSymptomInfection, getMinContactTransmissionProbability, getMinPeriodAsymptomInfection, getMinPeriodExposure, getMinPeriodSymptomInfection, getMovementProbability, getName, getPeriodsperDay, getRatCount, getRatScape, getUID, main, scapeSetup, setCaseMortalityRate, setCity, setCityDimensions, setCityHeight, setCityWidth, setFleaCount, setFleaRange, setIndividualCount, setInitialInfectionProbability, setMaxContactTransmissionProbability, setMaxPeriodAsymptomInfection, setMaxPeriodExposure, setMaxPeriodSymptomInfection, setMinContactTransmissionProbability, setMinPeriodAsymptomInfection, setMinPeriodExposure, setMinPeriodSymptomInfection, setMovementProbability, setPeriodsperDay, setRatCount, startSimulationAgentChild`

Methods inherited from class org.ascape.model.Scape
`add, add, add, add, addAll, addDrawFeature, addInitialRule, addInitialRule, addRule, addRule, addScapeListener, addScapeListenerFirst, addStatCollector, addStatCollectorIfNew, addStatCollectors, addView, addView, addView, addViews, addViews, addViews, assignParameters, assignParameters, calculateDistance, calculateDistance, clear, construct, contains, containsAll, contentsToString, countWithin, createNonGraphicViews, createSelfView, createViews, createViews, environmentQuiting, execute, execute, executeOnMembers, executeOnMembers, executeOnMembers, executeOnMembers, executeOnRoot, executeOnRoot, find, findMaximum, findMaximum, findMaximumWithin, findMinimum, findMinimum, findMinimumWithin, findNearest, findRandom, findRandom, findRandom, findRandomCoordinate, findWithin, get, get, getAgentsPerIteration, getAllScapes, getCollectStats, getData, getDescription, getDrawFeatures, getDrawFeaturesObservable, getEnvironment, getExecutionOrder, getExecutionStyle, getExtent, getHome, getHTMLDescription, getInitialRules, getIteration, getIterationsPerRedraw, getModel, getPausePeriod, getPeriod, getPeriodDescription, getPeriodName, getPrototype, getPrototypeAgent, getRoot, getRules, getRunner, getScapeListeners, getSize, getSpace, getStartPeriod, getStatCollectors, getStopPeriod, getSuperScape, getThreadCount, getUIEnvironment, getUserEnvironment, hasWithin, initialize, isAllViewsUpdated, isAutoCreate, isCellsRequestUpdates, isEmpty, isGraphic, isHome, isLifeOfScape, isListenersAndMembersCurrent, isMembersActive, isMutable, isPaused, isPeriodic, isPopulateOnCreate, isRoot, isRunning, isScapeListener, isSerializable, isStartOnOpen, isUpdateNeeded, isValidPeriod, isViewSelf, iterator, listenerOrMemberUpdated, listenerUpdated, memberUpdated, moveAway, moveToward, newAgent, newAgent, notifyViews, notifyViews, populate, remove, remove, removeAll, removeDrawFeature, removeScapeListener, respondControl, respondDrawFeature, retainAll, retrieveAllAccessors, retrieveAllAccessorsOrdered, retrieveModelAccessorsOrdered, save, save, scapeAdded, scapeClosing, scapeDeserialized, scapeInitialized, scapeIterated, scapeIterator, scapeIterator, scapeIterators, scapeNotification, scapeRandomIterator, scapeRemoved, scapeStarted, scapeStopped, search, searchMax, searchMin, set, set, set, set, setAgentsPerIteration, setAutoCreate, setAutoRestart, setCellsRequestUpdates, setCollectStats, setCollectStats, setDescription, setEarliestPeriod, setExecutionOrder, setExecutionStyle, setExtent, setExtent, setExtent, setHome, setHTMLDescription, setInitialRules, setIterationsPerRedraw, setIterationsPerRedraw, setLatestPeriod, setMembersActive, setPaused, setPausePeriod, setPeriodic, setPeriodName, setPopulateOnCreate, setPrototypeAgent, setRunner, setRunning, setSerializable, setSize, setSpace, setStartOnOpen, setStartPeriod, setStopPeriod, setSuperScape, setThreadCount, setViewSelf, size, toArray, toArray, toString, withinIterator`

Methods inherited from class org.ascape.model.CellOccupant
`die, findAvailableNeighbors, findNearest, findNearest, findNearest, findNearest, findNearest, findNeighbors, findNeighborsOnHost, findRandomAvailableNeighbor, findRandomNeighbor, findRandomNeighborOnHost, findWithin, findWithin, findWithin, getCoordinate, getHostCell, getHostScape, leave, moveAway, moveTo, moveToRandomLocation, moveToward, playNeighbors, playRandomNeighbor, randomWalk, randomWalkAvailable, setHostCell, setHostScape`

Methods inherited from class org.ascape.model.Cell
`calculateNeighbors, countNeighbors, findOccupants, findRelative, getDistance, getNeighbors, getNeighbors, getNetwork, getOccupant, hostedCondition, isAvailable, removeOccupant, setNeighbors, setNeighborsList, setNetwork, setOccupant`

Methods inherited from class org.ascape.model.LocatedAgent
`calculateDistance, calculateDistance, countWithin, countWithin, countWithin, findMaximumWithin, findWithin, getAgentSize, hasWithin, hasWithin, hasWithin, isUpdateNeeded, moveAway, moveAway, moveTo, moveToward, moveToward, requestUpdate, requestUpdateNext, setAgentSize, setCoordinate`

Methods inherited from class org.ascape.model.Agent
`clearDeleteMarker, death, deathCondition, execute, execute, fission, fissionCondition, fissioning, getColor, getColor, getImage, getImage, getPlatformColor, isDelete, isInitialized, iterate, markForDeletion, metabolism, move, movement, movementCondition, play, scapeCreated, setInitialized, setScape, update`

Methods inherited from class org.ascape.model.AscapeObject
`diffDeep, diffDeep, diffDeepBFS, diffDeepDFS, diffDeepValidate, diffDeepVisit, equalsDeep, equalsDeep, equalsDeep, getComparisonStream, getRandom, getRandomSeed, getScape, randomInRange, randomInRange, randomIs, randomToLimit, reseed, setComparisonStream, setName, setRandom, setRandomSeed`

Methods inherited from class java.lang.Object
`equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Methods inherited from interface java.util.Collection
`equals, hashCode`

Methods inherited from interface org.ascape.model.event.ScapeListener
`getScape`

Methods inherited from interface org.ascape.model.space.Location
`clearDeleteMarker, isDelete, markForDeletion, setCoordinate`

Constructor Detail

### Epidemic3D

    public Epidemic3D()

Method Detail

### createGraphicViews

    public void createGraphicViews()

  Overrides:
    `createGraphicViews` in class `Epidemic`

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