GetFEM  5.4.2
gmm_inoutput.h
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1 /* -*- c++ -*- (enables emacs c++ mode) */
2 /*===========================================================================
3 
4  Copyright (C) 2003-2020 Yves Renard, Julien Pommier
5 
6  This file is a part of GetFEM
7 
8  GetFEM is free software; you can redistribute it and/or modify it
9  under the terms of the GNU Lesser General Public License as published
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11  (at your option) any later version along with the GCC Runtime Library
12  Exception either version 3.1 or (at your option) any later version.
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20 
21  As a special exception, you may use this file as it is a part of a free
22  software library without restriction. Specifically, if other files
23  instantiate templates or use macros or inline functions from this file,
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29 
30 ===========================================================================*/
31 
32 /**@file gmm_inoutput.h
33  @author Yves Renard <Yves.Renard@insa-lyon.fr>
34  @author Julien Pommier <Julien.Pommier@insa-toulouse.fr>
35  @date July 8, 2003.
36  @brief Input/output on sparse matrices
37 
38  Support Harwell-Boeing and Matrix-Market formats.
39 */
40 #ifndef GMM_INOUTPUT_H
41 #define GMM_INOUTPUT_H
42 
43 #include <stdio.h>
44 #include "gmm_kernel.h"
45 namespace gmm {
46 
47  /*************************************************************************/
48  /* */
49  /* Functions to read and write Harwell Boeing format. */
50  /* */
51  /*************************************************************************/
52 
53  // Fri Aug 15 16:29:47 EDT 1997
54  //
55  // Harwell-Boeing File I/O in C
56  // V. 1.0
57  //
58  // National Institute of Standards and Technology, MD.
59  // K.A. Remington
60  // ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
61  // NOTICE
62  //
63  // Permission to use, copy, modify, and distribute this software and
64  // its documentation for any purpose and without fee is hereby granted
65  // provided that the above copyright notice appear in all copies and
66  // that both the copyright notice and this permission notice appear in
67  // supporting documentation.
68  //
69  // Neither the Author nor the Institution (National Institute of Standards
70  // and Technology) make any representations about the suitability of this
71  // software for any purpose. This software is provided "as is" without
72  // expressed or implied warranty.
73  // ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
74 
75  inline void IOHBTerminate(const char *a) { GMM_ASSERT1(false, a);}
76 
77  inline bool is_complex_double__(std::complex<double>) { return true; }
78  inline bool is_complex_double__(double) { return false; }
79 
80  inline int ParseIfmt(const char *fmt, int* perline, int* width) {
81  if (SECURE_NONCHAR_SSCANF(fmt, " (%dI%d)", perline, width) != 2) {
82  *perline = 1;
83  int s = SECURE_NONCHAR_SSCANF(fmt, " (I%d)", width);
84  GMM_ASSERT1(s == 1, "invalid HB I-format: " << fmt);
85  }
86  return *width;
87  }
88 
89  inline int ParseRfmt(const char *fmt, int* perline, int* width,
90  int* prec, int* flag) {
91  char p;
92  *perline = *width = *flag = *prec = 0;
93 #ifdef GMM_SECURE_CRT
94  if (sscanf_s(fmt, " (%d%c%d.%d)", perline, &p, sizeof(char), width, prec)
95  < 3 || !strchr("PEDF", p))
96 #else
97  if (sscanf(fmt, " (%d%c%d.%d)", perline, &p, width, prec) < 3
98  || !strchr("PEDF", p))
99 #endif
100  {
101  *perline = 1;
102 #ifdef GMM_SECURE_CRT
103  int s = sscanf_s(fmt, " (%c%d.%d)", &p, sizeof(char), width, prec);
104 #else
105  int s = sscanf(fmt, " (%c%d.%d)", &p, width, prec);
106 #endif
107  GMM_ASSERT1(s>=2 && strchr("PEDF",p), "invalid HB REAL format: " << fmt);
108  }
109  *flag = p;
110  return *width;
111  }
112 
113  /** matrix input/output for Harwell-Boeing format */
114  struct HarwellBoeing_IO {
115  int nrows() const { return Nrow; }
116  int ncols() const { return Ncol; }
117  int nnz() const { return Nnzero; }
118  int is_complex() const { return Type[0] == 'C'; }
119  int is_symmetric() const { return Type[1] == 'S'; }
120  int is_hermitian() const { return Type[1] == 'H'; }
121  HarwellBoeing_IO() { clear(); }
122  HarwellBoeing_IO(const char *filename) { clear(); open(filename); }
123  ~HarwellBoeing_IO() { close(); }
124  /** open filename and reads header */
125  void open(const char *filename);
126  /** read the opened file */
127  template <typename T, typename IND_TYPE, int shift> void read(csc_matrix<T, IND_TYPE, shift>& A);
128  template <typename MAT> void read(MAT &M) IS_DEPRECATED;
129  template <typename T, typename IND_TYPE, int shift>
130  static void write(const char *filename, const csc_matrix<T, IND_TYPE, shift>& A);
131  template <typename T, typename IND_TYPE, int shift>
132  static void write(const char *filename, const csc_matrix<T, IND_TYPE, shift>& A,
133  const std::vector<T> &rhs);
134  template <typename T, typename INDI, typename INDJ, int shift>
135  static void write(const char *filename,
136  const csc_matrix_ref<T*, INDI*, INDJ*, shift>& A);
137  template <typename T, typename INDI, typename INDJ, int shift>
138  static void write(const char *filename,
139  const csc_matrix_ref<T*, INDI*, INDJ*, shift>& A,
140  const std::vector<T> &rhs);
141 
142  /** static method for saving the matrix */
143  template <typename MAT> static void write(const char *filename,
144  const MAT& A) IS_DEPRECATED;
145  private:
146  FILE *f;
147  char Title[73], Key[9], Rhstype[4], Type[4];
148  int Nrow, Ncol, Nnzero, Nrhs;
149  char Ptrfmt[17], Indfmt[17], Valfmt[21], Rhsfmt[21];
150  int Ptrcrd, Indcrd, Valcrd, Rhscrd;
151  int lcount;
152 
153 
154  void close() { if (f) fclose(f); clear(); }
155  void clear() {
156  Nrow = Ncol = Nnzero = Nrhs = 0; f = 0; lcount = 0;
157  memset(Type, 0, sizeof Type);
158  memset(Key, 0, sizeof Key);
159  memset(Title, 0, sizeof Title);
160  }
161  char *getline(char *buf) {
162  char *p = fgets(buf, BUFSIZ, f); ++lcount;
163  int s = SECURE_NONCHAR_SSCANF(buf,"%*s");
164  GMM_ASSERT1(s >= 0 && p != 0,
165  "blank line in HB file at line " << lcount);
166  return buf;
167  }
168 
169  int substrtoi(const char *p, size_type len) {
170  char s[100]; len = std::min(len, sizeof s - 1);
171  SECURE_STRNCPY(s, 100, p, len); s[len] = 0; return atoi(s);
172  }
173  double substrtod(const char *p, size_type len, int Valflag) {
174  char s[100]; len = std::min(len, sizeof s - 1);
175  SECURE_STRNCPY(s, 100, p, len); s[len] = 0;
176  if ( Valflag != 'F' && !strchr(s,'E')) {
177  /* insert a char prefix for exp */
178  int last = int(strlen(s));
179  for (int j=last+1;j>=0;j--) {
180  s[j] = s[j-1];
181  if ( s[j] == '+' || s[j] == '-' ) {
182  s[j-1] = char(Valflag);
183  break;
184  }
185  }
186  }
187  return atof(s);
188  }
189  template <typename IND_TYPE>
190  int readHB_data(IND_TYPE colptr[], IND_TYPE rowind[],
191  double val[]) {
192  /***********************************************************************/
193  /* This function opens and reads the specified file, interpreting its */
194  /* contents as a sparse matrix stored in the Harwell/Boeing standard */
195  /* format and creating compressed column storage scheme vectors to */
196  /* hold the index and nonzero value information. */
197  /* */
198  /* ---------- */
199  /* **CAVEAT** */
200  /* ---------- */
201  /* Parsing real formats from Fortran is tricky, and this file reader */
202  /* does not claim to be foolproof. It has been tested for cases */
203  /* when the real values are printed consistently and evenly spaced on */
204  /* each line, with Fixed (F), and Exponential (E or D) formats. */
205  /* */
206  /* ** If the input file does not adhere to the H/B format, the ** */
207  /* ** results will be unpredictable. ** */
208  /* */
209  /***********************************************************************/
210  int i,ind,col,offset,count;
211  int Ptrperline, Ptrwidth, Indperline, Indwidth;
212  int Valperline, Valwidth, Valprec, Nentries;
213  int Valflag = 'D'; /* Indicates 'E','D', or 'F' float format */
214  char line[BUFSIZ];
215  gmm::standard_locale sl;
216 
217 
218  /* Parse the array input formats from Line 3 of HB file */
219  ParseIfmt(Ptrfmt,&Ptrperline,&Ptrwidth);
220  ParseIfmt(Indfmt,&Indperline,&Indwidth);
221  if ( Type[0] != 'P' ) { /* Skip if pattern only */
222  ParseRfmt(Valfmt,&Valperline,&Valwidth,&Valprec,&Valflag);
223  }
224 
225  /* Read column pointer array: */
226  offset = 0; /* if base 0 storage is declared (via macro def), */
227  /* then storage entries are offset by 1 */
228 
229  for (count = 0, i=0;i<Ptrcrd;i++) {
230  getline(line);
231  for (col = 0, ind = 0;ind<Ptrperline;ind++) {
232  if (count > Ncol) break;
233  colptr[count] = substrtoi(line+col,Ptrwidth)-offset;
234  count++; col += Ptrwidth;
235  }
236  }
237 
238  /* Read row index array: */
239  for (count = 0, i=0;i<Indcrd;i++) {
240  getline(line);
241  for (col = 0, ind = 0;ind<Indperline;ind++) {
242  if (count == Nnzero) break;
243  rowind[count] = substrtoi(line+col,Indwidth)-offset;
244  count++; col += Indwidth;
245  }
246  }
247 
248  /* Read array of values: */
249  if ( Type[0] != 'P' ) { /* Skip if pattern only */
250  if ( Type[0] == 'C' ) Nentries = 2*Nnzero;
251  else Nentries = Nnzero;
252 
253  count = 0;
254  for (i=0;i<Valcrd;i++) {
255  getline(line);
256  if (Valflag == 'D') {
257  // const_cast Due to aCC excentricity
258  char *p;
259  while( (p = const_cast<char *>(strchr(line,'D')) )) *p = 'E';
260  }
261  for (col = 0, ind = 0;ind<Valperline;ind++) {
262  if (count == Nentries) break;
263  val[count] = substrtod(line+col, Valwidth, Valflag);
264  count++; col += Valwidth;
265  }
266  }
267  }
268  return 1;
269  }
270  };
271 
272  inline void HarwellBoeing_IO::open(const char *filename) {
273  int Totcrd,Neltvl,Nrhsix;
274  char line[BUFSIZ];
275  close();
276  SECURE_FOPEN(&f, filename, "r");
277  GMM_ASSERT1(f, "could not open " << filename);
278  /* First line: */
279 #ifdef GMM_SECURE_CRT
280  sscanf_s(getline(line), "%c%s", Title, 72, Key, 8);
281 #else
282  sscanf(getline(line), "%72c%8s", Title, Key);
283 #endif
284  Key[8] = Title[72] = 0;
285  /* Second line: */
286  Totcrd = Ptrcrd = Indcrd = Valcrd = Rhscrd = 0;
287  SECURE_NONCHAR_SSCANF(getline(line), "%d%d%d%d%d", &Totcrd, &Ptrcrd,
288  &Indcrd, &Valcrd, &Rhscrd);
289 
290  /* Third line: */
291  Nrow = Ncol = Nnzero = Neltvl = 0;
292 #ifdef GMM_SECURE_CRT
293  if (sscanf_s(getline(line), "%c%d%d%d%d", Type, 3, &Nrow, &Ncol, &Nnzero,
294  &Neltvl) < 1)
295 #else
296  if (sscanf(getline(line), "%3c%d%d%d%d", Type, &Nrow, &Ncol, &Nnzero,
297  &Neltvl) < 1)
298 #endif
299  IOHBTerminate("Invalid Type info, line 3 of Harwell-Boeing file.\n");
300  for (size_type i = 0; i < 3; ++i) Type[i] = char(toupper(Type[i]));
301 
302  /* Fourth line: */
303 #ifdef GMM_SECURE_CRT
304  if ( sscanf_s(getline(line), "%c%c%c%c",Ptrfmt, 16,Indfmt, 16,Valfmt,
305  20,Rhsfmt, 20) < 3)
306 #else
307  if ( sscanf(getline(line), "%16c%16c%20c%20c",Ptrfmt,Indfmt,Valfmt,
308  Rhsfmt) < 3)
309 #endif
310  IOHBTerminate("Invalid format info, line 4 of Harwell-Boeing file.\n");
311  Ptrfmt[16] = Indfmt[16] = Valfmt[20] = Rhsfmt[20] = 0;
312 
313  /* (Optional) Fifth line: */
314  if (Rhscrd != 0 ) {
315  Nrhs = Nrhsix = 0;
316 #ifdef GMM_SECURE_CRT
317  if ( sscanf_s(getline(line), "%c%d%d", Rhstype, 3, &Nrhs, &Nrhsix) != 1)
318 #else
319  if ( sscanf(getline(line), "%3c%d%d", Rhstype, &Nrhs, &Nrhsix) != 1)
320 #endif
321  IOHBTerminate("Invalid RHS type information, line 5 of"
322  " Harwell-Boeing file.\n");
323  }
324  }
325 
326  /* only valid for double and complex<double> csc matrices */
327  template <typename T, typename IND_TYPE, int shift> void
328  HarwellBoeing_IO::read(csc_matrix<T, IND_TYPE, shift>& A) {
329 
330  // typedef typename csc_matrix<T, shift>::IND_TYPE IND_TYPE;
331 
332  GMM_ASSERT1(f, "no file opened!");
333  GMM_ASSERT1(Type[0] != 'P',
334  "Bad HB matrix format (pattern matrices not supported)");
335  GMM_ASSERT1(!is_complex_double__(T()) || Type[0] != 'R',
336  "Bad HB matrix format (file contains a REAL matrix)");
337  GMM_ASSERT1(is_complex_double__(T()) || Type[0] != 'C',
338  "Bad HB matrix format (file contains a COMPLEX matrix)");
339  A.nc = ncols(); A.nr = nrows();
340  A.jc.resize(ncols()+1);
341  A.ir.resize(nnz());
342  A.pr.resize(nnz());
343  readHB_data(&A.jc[0], &A.ir[0], (double*)&A.pr[0]);
344  for (int i = 0; i <= ncols(); ++i) { A.jc[i] += shift; A.jc[i] -= 1; }
345  for (int i = 0; i < nnz(); ++i) { A.ir[i] += shift; A.ir[i] -= 1; }
346  }
347 
348  template <typename MAT> void
349  HarwellBoeing_IO::read(MAT &M) {
350  csc_matrix<typename gmm::linalg_traits<MAT>::value_type> csc;
351  read(csc);
352  resize(M, mat_nrows(csc), mat_ncols(csc));
353  copy(csc, M);
354  }
355 
356  template <typename IND_TYPE>
357  inline int writeHB_mat_double(const char* filename, int M, int N, int nz,
358  const IND_TYPE colptr[],
359  const IND_TYPE rowind[],
360  const double val[], int Nrhs,
361  const double rhs[], const double guess[],
362  const double exact[], const char* Title,
363  const char* Key, const char* Type,
364  const char* Ptrfmt, const char* Indfmt,
365  const char* Valfmt, const char* Rhsfmt,
366  const char* Rhstype, int shift) {
367  /************************************************************************/
368  /* The writeHB function opens the named file and writes the specified */
369  /* matrix and optional right-hand-side(s) to that file in */
370  /* Harwell-Boeing format. */
371  /* */
372  /* For a description of the Harwell Boeing standard, see: */
373  /* Duff, et al., ACM TOMS Vol.15, No.1, March 1989 */
374  /* */
375  /************************************************************************/
376  FILE *out_file;
377  int i, entry, offset, j, acount, linemod;
378  int totcrd, ptrcrd, indcrd, valcrd, rhscrd;
379  int nvalentries, nrhsentries;
380  int Ptrperline, Ptrwidth, Indperline, Indwidth;
381  int Rhsperline, Rhswidth, Rhsprec, Rhsflag;
382  int Valperline, Valwidth, Valprec;
383  int Valflag; /* Indicates 'E','D', or 'F' float format */
384  char pformat[16],iformat[16],vformat[19],rformat[19];
385  // char *pValflag, *pRhsflag;
386  gmm::standard_locale sl;
387 
388  if ( Type[0] == 'C' )
389  { nvalentries = 2*nz; nrhsentries = 2*M; }
390  else
391  { nvalentries = nz; nrhsentries = M; }
392 
393  if ( filename != NULL ) {
394  SECURE_FOPEN(&out_file, filename, "w");
395  GMM_ASSERT1(out_file != NULL, "Error: Cannot open file: " << filename);
396  } else out_file = stdout;
397 
398  if ( Ptrfmt == NULL ) Ptrfmt = "(8I10)";
399  ParseIfmt(Ptrfmt, &Ptrperline, &Ptrwidth);
400  SECURE_SPRINTF1(pformat,sizeof(pformat),"%%%dd",Ptrwidth);
401  ptrcrd = (N+1)/Ptrperline;
402  if ( (N+1)%Ptrperline != 0) ptrcrd++;
403 
404  if ( Indfmt == NULL ) Indfmt = Ptrfmt;
405  ParseIfmt(Indfmt, &Indperline, &Indwidth);
406  SECURE_SPRINTF1(iformat,sizeof(iformat), "%%%dd",Indwidth);
407  indcrd = nz/Indperline;
408  if ( nz%Indperline != 0) indcrd++;
409 
410  if ( Type[0] != 'P' ) { /* Skip if pattern only */
411  if ( Valfmt == NULL ) Valfmt = "(4E21.13)";
412  ParseRfmt(Valfmt, &Valperline, &Valwidth, &Valprec, &Valflag);
413 // if (Valflag == 'D') {
414 // pValflag = (char *) strchr(Valfmt,'D');
415 // *pValflag = 'E';
416 // }
417  if (Valflag == 'F')
418  SECURE_SPRINTF2(vformat, sizeof(vformat), "%% %d.%df", Valwidth,
419  Valprec);
420  else
421  SECURE_SPRINTF2(vformat, sizeof(vformat), "%% %d.%dE", Valwidth,
422  Valprec);
423  valcrd = nvalentries/Valperline;
424  if ( nvalentries%Valperline != 0) valcrd++;
425  } else valcrd = 0;
426 
427  if ( Nrhs > 0 ) {
428  if ( Rhsfmt == NULL ) Rhsfmt = Valfmt;
429  ParseRfmt(Rhsfmt,&Rhsperline,&Rhswidth,&Rhsprec, &Rhsflag);
430  if (Rhsflag == 'F')
431  SECURE_SPRINTF2(rformat,sizeof(rformat), "%% %d.%df",Rhswidth,Rhsprec);
432  else
433  SECURE_SPRINTF2(rformat,sizeof(rformat), "%% %d.%dE",Rhswidth,Rhsprec);
434 // if (Valflag == 'D') {
435 // pRhsflag = (char *) strchr(Rhsfmt,'D');
436 // *pRhsflag = 'E';
437 // }
438  rhscrd = nrhsentries/Rhsperline;
439  if ( nrhsentries%Rhsperline != 0) rhscrd++;
440  if ( Rhstype[1] == 'G' ) rhscrd+=rhscrd;
441  if ( Rhstype[2] == 'X' ) rhscrd+=rhscrd;
442  rhscrd*=Nrhs;
443  } else rhscrd = 0;
444 
445  totcrd = 4+ptrcrd+indcrd+valcrd+rhscrd;
446 
447 
448  /* Print header information: */
449 
450  fprintf(out_file,"%-72s%-8s\n%14d%14d%14d%14d%14d\n",Title, Key, totcrd,
451  ptrcrd, indcrd, valcrd, rhscrd);
452  fprintf(out_file,"%3s%11s%14d%14d%14d%14d\n",Type," ", M, N, nz, 0);
453  fprintf(out_file,"%-16s%-16s%-20s", Ptrfmt, Indfmt, Valfmt);
454  if ( Nrhs != 0 ) {
455  /* Print Rhsfmt on fourth line and */
456  /* optional fifth header line for auxillary vector information:*/
457  fprintf(out_file,"%-20s\n%-14s%d\n",Rhsfmt,Rhstype,Nrhs);
458  }
459  else
460  fprintf(out_file,"\n");
461 
462  offset = 1 - shift; /* if base 0 storage is declared (via macro def), */
463  /* then storage entries are offset by 1 */
464 
465  /* Print column pointers: */
466  for (i = 0; i < N+1; i++) {
467  entry = colptr[i]+offset;
468  fprintf(out_file,pformat,entry);
469  if ( (i+1)%Ptrperline == 0 ) fprintf(out_file,"\n");
470  }
471 
472  if ( (N+1) % Ptrperline != 0 ) fprintf(out_file,"\n");
473 
474  /* Print row indices: */
475  for (i=0;i<nz;i++) {
476  entry = rowind[i]+offset;
477  fprintf(out_file,iformat,entry);
478  if ( (i+1)%Indperline == 0 ) fprintf(out_file,"\n");
479  }
480 
481  if ( nz % Indperline != 0 ) fprintf(out_file,"\n");
482 
483  /* Print values: */
484 
485  if ( Type[0] != 'P' ) { /* Skip if pattern only */
486  for (i=0;i<nvalentries;i++) {
487  fprintf(out_file,vformat,val[i]);
488  if ( (i+1)%Valperline == 0 ) fprintf(out_file,"\n");
489  }
490 
491  if ( nvalentries % Valperline != 0 ) fprintf(out_file,"\n");
492 
493  /* Print right hand sides: */
494  acount = 1;
495  linemod=0;
496  if ( Nrhs > 0 ) {
497  for (j=0;j<Nrhs;j++) {
498  for (i=0;i<nrhsentries;i++) {
499  fprintf(out_file,rformat,rhs[i] /* *Rhswidth */);
500  if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n");
501  }
502  if ( acount%Rhsperline != linemod ) {
503  fprintf(out_file,"\n");
504  linemod = (acount-1)%Rhsperline;
505  }
506  if ( Rhstype[1] == 'G' ) {
507  for (i=0;i<nrhsentries;i++) {
508  fprintf(out_file,rformat,guess[i] /* *Rhswidth */);
509  if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n");
510  }
511  if ( acount%Rhsperline != linemod ) {
512  fprintf(out_file,"\n");
513  linemod = (acount-1)%Rhsperline;
514  }
515  }
516  if ( Rhstype[2] == 'X' ) {
517  for (i=0;i<nrhsentries;i++) {
518  fprintf(out_file,rformat,exact[i] /* *Rhswidth */);
519  if ( acount++%Rhsperline == linemod ) fprintf(out_file,"\n");
520  }
521  if ( acount%Rhsperline != linemod ) {
522  fprintf(out_file,"\n");
523  linemod = (acount-1)%Rhsperline;
524  }
525  }
526  }
527  }
528  }
529  int s = fclose(out_file);
530  GMM_ASSERT1(s == 0, "Error closing file in writeHB_mat_double().");
531  return 1;
532  }
533 
534  template <typename T, typename IND_TYPE, int shift> void
535  HarwellBoeing_IO::write(const char *filename,
536  const csc_matrix<T, IND_TYPE, shift>& A) {
537  write(filename, csc_matrix_ref<const T*, const unsigned*,
538  const unsigned *, shift>
539  (&A.pr[0], &A.ir[0], &A.jc[0], A.nr, A.nc));
540  }
541 
542  template <typename T, typename IND_TYPE, int shift> void
543  HarwellBoeing_IO::write(const char *filename,
544  const csc_matrix<T, IND_TYPE, shift>& A,
545  const std::vector<T> &rhs) {
546  write(filename, csc_matrix_ref<const T*, const unsigned*,
547  const unsigned *, shift>
548  (&A.pr[0], &A.ir[0], &A.jc[0], A.nr, A.nc), rhs);
549  }
550 
551  template <typename T, typename INDI, typename INDJ, int shift> void
552  HarwellBoeing_IO::write(const char *filename,
553  const csc_matrix_ref<T*, INDI*, INDJ*, shift>& A) {
554  const char *t = 0;
555  if (is_complex_double__(T()))
556  if (mat_nrows(A) == mat_ncols(A)) t = "CUA"; else t = "CRA";
557  else
558  if (mat_nrows(A) == mat_ncols(A)) t = "RUA"; else t = "RRA";
559  writeHB_mat_double(filename, int(mat_nrows(A)), int(mat_ncols(A)),
560  A.jc[mat_ncols(A)], A.jc, A.ir,
561  (const double *)A.pr,
562  0, 0, 0, 0, "GETFEM++ CSC MATRIX", "CSCMAT",
563  t, 0, 0, 0, 0, "F", shift);
564  }
565 
566  template <typename T, typename INDI, typename INDJ, int shift> void
567  HarwellBoeing_IO::write(const char *filename,
568  const csc_matrix_ref<T*, INDI*, INDJ*, shift>& A,
569  const std::vector<T> &rhs) {
570  const char *t = 0;
571  if (is_complex_double__(T()))
572  if (mat_nrows(A) == mat_ncols(A)) t = "CUA"; else t = "CRA";
573  else
574  if (mat_nrows(A) == mat_ncols(A)) t = "RUA"; else t = "RRA";
575  int Nrhs = gmm::vect_size(rhs) / mat_nrows(A);
576  writeHB_mat_double(filename, int(mat_nrows(A)), int(mat_ncols(A)),
577  A.jc[mat_ncols(A)], A.jc, A.ir,
578  (const double *)A.pr,
579  Nrhs, (const double *)(&rhs[0]), 0, 0,
580  "GETFEM++ CSC MATRIX", "CSCMAT",
581  t, 0, 0, 0, 0, "F ", shift);
582  }
583 
584 
585  template <typename MAT> void
586  HarwellBoeing_IO::write(const char *filename, const MAT& A) {
587  gmm::csc_matrix<typename gmm::linalg_traits<MAT>::value_type>
588  tmp(gmm::mat_nrows(A), gmm::mat_ncols(A));
589  gmm::copy(A,tmp);
590  HarwellBoeing_IO::write(filename, tmp);
591  }
592 
593  /** save a "double" or "std::complex<double>" csc matrix into a
594  HarwellBoeing file
595  */
596  template <typename T, typename IND_TYPE, int shift> inline void
597  Harwell_Boeing_save(const std::string &filename,
598  const csc_matrix<T, IND_TYPE, shift>& A)
599  { HarwellBoeing_IO::write(filename.c_str(), A); }
600 
601  /** save a reference on "double" or "std::complex<double>" csc matrix
602  into a HarwellBoeing file
603  */
604  template <typename T, typename INDI, typename INDJ, int shift> inline void
605  Harwell_Boeing_save(const std::string &filename,
606  const csc_matrix_ref<T, INDI, INDJ, shift>& A)
607  { HarwellBoeing_IO::write(filename.c_str(), A); }
608 
609  /** save a "double" or "std::complex<double>" generic matrix
610  into a HarwellBoeing file making a copy in a csc matrix
611  */
612  template <typename MAT> inline void
613  Harwell_Boeing_save(const std::string &filename, const MAT& A) {
614  gmm::csc_matrix<typename gmm::linalg_traits<MAT>::value_type>
615  tmp(gmm::mat_nrows(A), gmm::mat_ncols(A));
616  gmm::copy(A, tmp);
617  HarwellBoeing_IO::write(filename.c_str(), tmp);
618  }
619 
620  template <typename MAT, typename VECT> inline void
621  Harwell_Boeing_save(const std::string &filename, const MAT& A,
622  const VECT &RHS) {
623  typedef typename gmm::linalg_traits<MAT>::value_type T;
624  gmm::csc_matrix<T> tmp(gmm::mat_nrows(A), gmm::mat_ncols(A));
625  gmm::copy(A, tmp);
626  std::vector<T> tmprhs(gmm::vect_size(RHS));
627  gmm::copy(RHS, tmprhs);
628  HarwellBoeing_IO::write(filename.c_str(), tmp, tmprhs);
629  }
630 
631  /** load a "double" or "std::complex<double>" csc matrix from a
632  HarwellBoeing file
633  */
634  template <typename T, typename IND_TYPE, int shift> void
635  Harwell_Boeing_load(const std::string &filename, csc_matrix<T, IND_TYPE, shift>& A) {
636  HarwellBoeing_IO h(filename.c_str()); h.read(A);
637  }
638 
639  /** load a "double" or "std::complex<double>" generic matrix from a
640  HarwellBoeing file
641  */
642  template <typename MAT> void
643  Harwell_Boeing_load(const std::string &filename, MAT& A) {
644  csc_matrix<typename gmm::linalg_traits<MAT>::value_type> csc;
645  Harwell_Boeing_load(filename, csc);
646  resize(A, mat_nrows(csc), mat_ncols(csc));
647  copy(csc, A);
648  }
649 
650  /*************************************************************************/
651  /* */
652  /* Functions to read and write MatrixMarket format. */
653  /* */
654  /*************************************************************************/
655 
656  /*
657  * Matrix Market I/O library for ANSI C
658  *
659  * See http://math.nist.gov/MatrixMarket for details.
660  *
661  *
662  */
663 
664 #define MM_MAX_LINE_LENGTH 1025
665 #define MatrixMarketBanner "%%MatrixMarket"
666 #define MM_MAX_TOKEN_LENGTH 64
667 
668  typedef char MM_typecode[4];
669 
670  /******************* MM_typecode query functions *************************/
671 
672 #define mm_is_matrix(typecode) ((typecode)[0]=='M')
673 
674 #define mm_is_sparse(typecode) ((typecode)[1]=='C')
675 #define mm_is_coordinate(typecode) ((typecode)[1]=='C')
676 #define mm_is_dense(typecode) ((typecode)[1]=='A')
677 #define mm_is_array(typecode) ((typecode)[1]=='A')
678 
679 #define mm_is_complex(typecode) ((typecode)[2]=='C')
680 #define mm_is_real(typecode) ((typecode)[2]=='R')
681 #define mm_is_pattern(typecode) ((typecode)[2]=='P')
682 #define mm_is_integer(typecode) ((typecode)[2]=='I')
683 
684 #define mm_is_symmetric(typecode) ((typecode)[3]=='S')
685 #define mm_is_general(typecode) ((typecode)[3]=='G')
686 #define mm_is_skew(typecode) ((typecode)[3]=='K')
687 #define mm_is_hermitian(typecode) ((typecode)[3]=='H')
688 
689  /******************* MM_typecode modify fucntions ************************/
690 
691 #define mm_set_matrix(typecode) ((*typecode)[0]='M')
692 #define mm_set_coordinate(typecode) ((*typecode)[1]='C')
693 #define mm_set_array(typecode) ((*typecode)[1]='A')
694 #define mm_set_dense(typecode) mm_set_array(typecode)
695 #define mm_set_sparse(typecode) mm_set_coordinate(typecode)
696 
697 #define mm_set_complex(typecode) ((*typecode)[2]='C')
698 #define mm_set_real(typecode) ((*typecode)[2]='R')
699 #define mm_set_pattern(typecode) ((*typecode)[2]='P')
700 #define mm_set_integer(typecode) ((*typecode)[2]='I')
701 
702 
703 #define mm_set_symmetric(typecode) ((*typecode)[3]='S')
704 #define mm_set_general(typecode) ((*typecode)[3]='G')
705 #define mm_set_skew(typecode) ((*typecode)[3]='K')
706 #define mm_set_hermitian(typecode) ((*typecode)[3]='H')
707 
708 #define mm_clear_typecode(typecode) ((*typecode)[0]=(*typecode)[1]= \
709  (*typecode)[2]=' ',(*typecode)[3]='G')
710 
711 #define mm_initialize_typecode(typecode) mm_clear_typecode(typecode)
712 
713 
714  /******************* Matrix Market error codes ***************************/
715 
716 
717 #define MM_COULD_NOT_READ_FILE 11
718 #define MM_PREMATURE_EOF 12
719 #define MM_NOT_MTX 13
720 #define MM_NO_HEADER 14
721 #define MM_UNSUPPORTED_TYPE 15
722 #define MM_LINE_TOO_LONG 16
723 #define MM_COULD_NOT_WRITE_FILE 17
724 
725 
726  /******************** Matrix Market internal definitions *****************
727 
728  MM_matrix_typecode: 4-character sequence
729 
730  object sparse/ data storage
731  dense type scheme
732 
733  string position: [0] [1] [2] [3]
734 
735  Matrix typecode: M(atrix) C(oord) R(eal) G(eneral)
736  A(array) C(omplex) H(ermitian)
737  P(attern) S(ymmetric)
738  I(nteger) K(kew)
739 
740  ***********************************************************************/
741 
742 #define MM_MTX_STR "matrix"
743 #define MM_ARRAY_STR "array"
744 #define MM_DENSE_STR "array"
745 #define MM_COORDINATE_STR "coordinate"
746 #define MM_SPARSE_STR "coordinate"
747 #define MM_COMPLEX_STR "complex"
748 #define MM_REAL_STR "real"
749 #define MM_INT_STR "integer"
750 #define MM_GENERAL_STR "general"
751 #define MM_SYMM_STR "symmetric"
752 #define MM_HERM_STR "hermitian"
753 #define MM_SKEW_STR "skew-symmetric"
754 #define MM_PATTERN_STR "pattern"
755 
756  inline char *mm_typecode_to_str(MM_typecode matcode) {
757  char buffer[MM_MAX_LINE_LENGTH];
758  const char *types[4] = {0,0,0,0};
759  /* int error =0; */
760  /* int i; */
761 
762  /* check for MTX type */
763  if (mm_is_matrix(matcode))
764  types[0] = MM_MTX_STR;
765  /*
766  else
767  error=1;
768  */
769  /* check for CRD or ARR matrix */
770  if (mm_is_sparse(matcode))
771  types[1] = MM_SPARSE_STR;
772  else
773  if (mm_is_dense(matcode))
774  types[1] = MM_DENSE_STR;
775  else
776  return NULL;
777 
778  /* check for element data type */
779  if (mm_is_real(matcode))
780  types[2] = MM_REAL_STR;
781  else
782  if (mm_is_complex(matcode))
783  types[2] = MM_COMPLEX_STR;
784  else
785  if (mm_is_pattern(matcode))
786  types[2] = MM_PATTERN_STR;
787  else
788  if (mm_is_integer(matcode))
789  types[2] = MM_INT_STR;
790  else
791  return NULL;
792 
793 
794  /* check for symmetry type */
795  if (mm_is_general(matcode))
796  types[3] = MM_GENERAL_STR;
797  else if (mm_is_symmetric(matcode))
798  types[3] = MM_SYMM_STR;
799  else if (mm_is_hermitian(matcode))
800  types[3] = MM_HERM_STR;
801  else if (mm_is_skew(matcode))
802  types[3] = MM_SKEW_STR;
803  else
804  return NULL;
805 
806  SECURE_SPRINTF4(buffer, sizeof(buffer), "%s %s %s %s", types[0], types[1],
807  types[2], types[3]);
808  return SECURE_STRDUP(buffer);
809 
810  }
811 
812  inline int mm_read_banner(FILE *f, MM_typecode *matcode) {
813  char line[MM_MAX_LINE_LENGTH];
814  char banner[MM_MAX_TOKEN_LENGTH];
815  char mtx[MM_MAX_TOKEN_LENGTH];
816  char crd[MM_MAX_TOKEN_LENGTH];
817  char data_type[MM_MAX_TOKEN_LENGTH];
818  char storage_scheme[MM_MAX_TOKEN_LENGTH];
819  char *p;
820  gmm::standard_locale sl;
821  /* int ret_code; */
822 
823  mm_clear_typecode(matcode);
824 
825  if (fgets(line, MM_MAX_LINE_LENGTH, f) == NULL)
826  return MM_PREMATURE_EOF;
827 
828 #ifdef GMM_SECURE_CRT
829  if (sscanf_s(line, "%s %s %s %s %s", banner, sizeof(banner),
830  mtx, sizeof(mtx), crd, sizeof(crd), data_type,
831  sizeof(data_type), storage_scheme,
832  sizeof(storage_scheme)) != 5)
833 #else
834  if (sscanf(line, "%s %s %s %s %s", banner, mtx, crd,
835  data_type, storage_scheme) != 5)
836 #endif
837  return MM_PREMATURE_EOF;
838 
839  for (p=mtx; *p!='\0'; *p=char(tolower(*p)),p++) {}; /* convert to lower case */
840  for (p=crd; *p!='\0'; *p=char(tolower(*p)),p++) {};
841  for (p=data_type; *p!='\0'; *p=char(tolower(*p)),p++) {};
842  for (p=storage_scheme; *p!='\0'; *p=char(tolower(*p)),p++) {};
843 
844  /* check for banner */
845  if (strncmp(banner, MatrixMarketBanner, strlen(MatrixMarketBanner)) != 0)
846  return MM_NO_HEADER;
847 
848  /* first field should be "mtx" */
849  if (strcmp(mtx, MM_MTX_STR) != 0)
850  return MM_UNSUPPORTED_TYPE;
851  mm_set_matrix(matcode);
852 
853 
854  /* second field describes whether this is a sparse matrix (in coordinate
855  storgae) or a dense array */
856 
857 
858  if (strcmp(crd, MM_SPARSE_STR) == 0)
859  mm_set_sparse(matcode);
860  else
861  if (strcmp(crd, MM_DENSE_STR) == 0)
862  mm_set_dense(matcode);
863  else
864  return MM_UNSUPPORTED_TYPE;
865 
866 
867  /* third field */
868 
869  if (strcmp(data_type, MM_REAL_STR) == 0)
870  mm_set_real(matcode);
871  else
872  if (strcmp(data_type, MM_COMPLEX_STR) == 0)
873  mm_set_complex(matcode);
874  else
875  if (strcmp(data_type, MM_PATTERN_STR) == 0)
876  mm_set_pattern(matcode);
877  else
878  if (strcmp(data_type, MM_INT_STR) == 0)
879  mm_set_integer(matcode);
880  else
881  return MM_UNSUPPORTED_TYPE;
882 
883 
884  /* fourth field */
885 
886  if (strcmp(storage_scheme, MM_GENERAL_STR) == 0)
887  mm_set_general(matcode);
888  else
889  if (strcmp(storage_scheme, MM_SYMM_STR) == 0)
890  mm_set_symmetric(matcode);
891  else
892  if (strcmp(storage_scheme, MM_HERM_STR) == 0)
893  mm_set_hermitian(matcode);
894  else
895  if (strcmp(storage_scheme, MM_SKEW_STR) == 0)
896  mm_set_skew(matcode);
897  else
898  return MM_UNSUPPORTED_TYPE;
899 
900  return 0;
901  }
902 
903  inline int mm_read_mtx_crd_size(FILE *f, int *M, int *N, int *nz ) {
904  char line[MM_MAX_LINE_LENGTH];
905  /* int ret_code;*/
906  int num_items_read;
907 
908  /* set return null parameter values, in case we exit with errors */
909  *M = *N = *nz = 0;
910 
911  /* now continue scanning until you reach the end-of-comments */
912  do {
913  if (fgets(line,MM_MAX_LINE_LENGTH,f) == NULL)
914  return MM_PREMATURE_EOF;
915  } while (line[0] == '%');
916 
917  /* line[] is either blank or has M,N, nz */
918  if (SECURE_NONCHAR_SSCANF(line, "%d %d %d", M, N, nz) == 3) return 0;
919  else
920  do {
921  num_items_read = SECURE_NONCHAR_FSCANF(f, "%d %d %d", M, N, nz);
922  if (num_items_read == EOF) return MM_PREMATURE_EOF;
923  }
924  while (num_items_read != 3);
925 
926  return 0;
927  }
928 
929 
930  inline int mm_read_mtx_crd_data(FILE *f, int, int, int nz, int II[],
931  int J[], double val[], MM_typecode matcode) {
932  int i;
933  if (mm_is_complex(matcode)) {
934  for (i=0; i<nz; i++)
935  if (SECURE_NONCHAR_FSCANF(f, "%d %d %lg %lg", &II[i], &J[i],
936  &val[2*i], &val[2*i+1])
937  != 4) return MM_PREMATURE_EOF;
938  }
939  else if (mm_is_real(matcode)) {
940  for (i=0; i<nz; i++) {
941  if (SECURE_NONCHAR_FSCANF(f, "%d %d %lg\n", &II[i], &J[i], &val[i])
942  != 3) return MM_PREMATURE_EOF;
943 
944  }
945  }
946  else if (mm_is_pattern(matcode)) {
947  for (i=0; i<nz; i++)
948  if (SECURE_NONCHAR_FSCANF(f, "%d %d", &II[i], &J[i])
949  != 2) return MM_PREMATURE_EOF;
950  }
951  else return MM_UNSUPPORTED_TYPE;
952 
953  return 0;
954  }
955 
956  inline int mm_write_mtx_crd(const char *fname, int M, int N, int nz,
957  int II[], int J[], const double val[],
958  MM_typecode matcode) {
959  FILE *f;
960  int i;
961 
962  if (strcmp(fname, "stdout") == 0)
963  f = stdout;
964  else {
965  SECURE_FOPEN(&f, fname, "w");
966  if (f == NULL)
967  return MM_COULD_NOT_WRITE_FILE;
968  }
969 
970  /* print banner followed by typecode */
971  fprintf(f, "%s ", MatrixMarketBanner);
972  char *str = mm_typecode_to_str(matcode);
973  fprintf(f, "%s\n", str);
974  free(str);
975 
976  /* print matrix sizes and nonzeros */
977  fprintf(f, "%d %d %d\n", M, N, nz);
978 
979  /* print values */
980  if (mm_is_pattern(matcode))
981  for (i=0; i<nz; i++)
982  fprintf(f, "%d %d\n", II[i], J[i]);
983  else
984  if (mm_is_real(matcode))
985  for (i=0; i<nz; i++)
986  fprintf(f, "%d %d %20.16g\n", II[i], J[i], val[i]);
987  else
988  if (mm_is_complex(matcode))
989  for (i=0; i<nz; i++)
990  fprintf(f, "%d %d %20.16g %20.16g\n", II[i], J[i], val[2*i],
991  val[2*i+1]);
992  else {
993  if (f != stdout) fclose(f);
994  return MM_UNSUPPORTED_TYPE;
995  }
996 
997  if (f !=stdout) fclose(f);
998  return 0;
999  }
1000 
1001 
1002  /** matrix input/output for MatrixMarket storage */
1003  class MatrixMarket_IO {
1004  FILE *f;
1005  bool isComplex, isSymmetric, isHermitian;
1006  int row, col, nz;
1007  MM_typecode matcode;
1008  public:
1009  MatrixMarket_IO() : f(0) {}
1010  MatrixMarket_IO(const char *filename) : f(0) { open(filename); }
1011  ~MatrixMarket_IO() { if (f) fclose(f); f = 0; }
1012 
1013  int nrows() const { return row; }
1014  int ncols() const { return col; }
1015  int nnz() const { return nz; }
1016  int is_complex() const { return isComplex; }
1017  int is_symmetric() const { return isSymmetric; }
1018  int is_hermitian() const { return isHermitian; }
1019 
1020  /* open filename and reads header */
1021  void open(const char *filename);
1022  /* read opened file */
1023  template <typename Matrix> void read(Matrix &A);
1024  /* write a matrix */
1025  template <typename T, typename IND_TYPE, int shift> static void
1026  write(const char *filename, const csc_matrix<T, IND_TYPE, shift>& A);
1027  template <typename T, typename INDI, typename INDJ, int shift> static void
1028  write(const char *filename,
1029  const csc_matrix_ref<T*, INDI*, INDJ*, shift>& A);
1030  template <typename MAT> static void
1031  write(const char *filename, const MAT& A);
1032  };
1033 
1034  /** load a matrix-market file */
1035  template <typename Matrix> inline void
1036  MatrixMarket_load(const char *filename, Matrix& A) {
1037  MatrixMarket_IO mm; mm.open(filename);
1038  mm.read(A);
1039  }
1040  /** write a matrix-market file */
1041  template <typename T, typename IND_TYPE, int shift> void
1042  MatrixMarket_save(const char *filename, const csc_matrix<T, IND_TYPE, shift>& A) {
1043  MatrixMarket_IO mm; mm.write(filename, A);
1044  }
1045 
1046  template <typename T, typename INDI, typename INDJ, int shift> inline void
1047  MatrixMarket_save(const char *filename,
1048  const csc_matrix_ref<T, INDI, INDJ, shift>& A) {
1049  MatrixMarket_IO mm; mm.write(filename, A);
1050  }
1051 
1052 
1053  inline void MatrixMarket_IO::open(const char *filename) {
1054  gmm::standard_locale sl;
1055  if (f) { fclose(f); }
1056  SECURE_FOPEN(&f, filename, "r");
1057  GMM_ASSERT1(f, "Sorry, cannot open file " << filename);
1058  int s1 = mm_read_banner(f, &matcode);
1059  GMM_ASSERT1(s1 == 0, "Sorry, cannnot find the matrix market banner in "
1060  << filename);
1061  int s2 = mm_is_coordinate(matcode), s3 = mm_is_matrix(matcode);
1062  GMM_ASSERT1(s2 > 0 && s3 > 0,
1063  "file is not coordinate storage or is not a matrix");
1064  int s4 = mm_is_pattern(matcode);
1065  GMM_ASSERT1(s4 == 0,
1066  "the file does only contain the pattern of a sparse matrix");
1067  int s5 = mm_is_skew(matcode);
1068  GMM_ASSERT1(s5 == 0, "not currently supporting skew symmetric");
1069  isSymmetric = mm_is_symmetric(matcode) || mm_is_hermitian(matcode);
1070  isHermitian = mm_is_hermitian(matcode);
1071  isComplex = mm_is_complex(matcode);
1072  mm_read_mtx_crd_size(f, &row, &col, &nz);
1073  }
1074 
1075  template <typename Matrix> void MatrixMarket_IO::read(Matrix &A) {
1076  gmm::standard_locale sl;
1077  typedef typename linalg_traits<Matrix>::value_type T;
1078  GMM_ASSERT1(f, "no file opened!");
1079  GMM_ASSERT1(!is_complex_double__(T()) || isComplex,
1080  "Bad MM matrix format (complex matrix expected)");
1081  GMM_ASSERT1(is_complex_double__(T()) || !isComplex,
1082  "Bad MM matrix format (real matrix expected)");
1083  A = Matrix(row, col);
1084  gmm::clear(A);
1085 
1086  std::vector<int> II(nz), J(nz);
1087  std::vector<typename Matrix::value_type> PR(nz);
1088  mm_read_mtx_crd_data(f, row, col, nz, &II[0], &J[0],
1089  (double*)&PR[0], matcode);
1090 
1091  for (size_type i = 0; i < size_type(nz); ++i) {
1092  A(II[i]-1, J[i]-1) = PR[i];
1093 
1094  // FIXED MM Format
1095  if (mm_is_hermitian(matcode) && (II[i] != J[i]) ) {
1096  A(J[i]-1, II[i]-1) = gmm::conj(PR[i]);
1097  }
1098 
1099  if (mm_is_symmetric(matcode) && (II[i] != J[i]) ) {
1100  A(J[i]-1, II[i]-1) = PR[i];
1101  }
1102 
1103  if (mm_is_skew(matcode) && (II[i] != J[i]) ) {
1104  A(J[i]-1, II[i]-1) = -PR[i];
1105  }
1106  }
1107  }
1108 
1109  template <typename T, typename IND_TYPE, int shift> void
1110  MatrixMarket_IO::write(const char *filename, const csc_matrix<T, IND_TYPE, shift>& A) {
1111  write(filename, csc_matrix_ref<const T*, const unsigned*,
1112  const unsigned*,shift>
1113  (&A.pr[0], &A.ir[0], &A.jc[0], A.nr, A.nc));
1114  }
1115 
1116  template <typename T, typename INDI, typename INDJ, int shift> void
1117  MatrixMarket_IO::write(const char *filename,
1118  const csc_matrix_ref<T*, INDI*, INDJ*, shift>& A) {
1119  gmm::standard_locale sl;
1120  static MM_typecode t1 = {'M', 'C', 'R', 'G'};
1121  static MM_typecode t2 = {'M', 'C', 'C', 'G'};
1122  MM_typecode t;
1123 
1124  if (is_complex_double__(T())) std::copy(&(t2[0]), &(t2[0])+4, &(t[0]));
1125  else std::copy(&(t1[0]), &(t1[0])+4, &(t[0]));
1126  size_type nz = A.jc[mat_ncols(A)];
1127  std::vector<int> II(nz), J(nz);
1128  for (size_type j=0; j < mat_ncols(A); ++j) {
1129  for (size_type i = A.jc[j]; i < A.jc[j+1]; ++i) {
1130  II[i] = A.ir[i] + 1 - shift;
1131  J[i] = int(j + 1);
1132  }
1133  }
1134  mm_write_mtx_crd(filename, int(mat_nrows(A)), int(mat_ncols(A)),
1135  int(nz), &II[0], &J[0], (const double *)A.pr, t);
1136  }
1137 
1138 
1139  template <typename MAT> void
1140  MatrixMarket_IO::write(const char *filename, const MAT& A) {
1141  gmm::csc_matrix<typename gmm::linalg_traits<MAT>::value_type>
1142  tmp(gmm::mat_nrows(A), gmm::mat_ncols(A));
1143  gmm::copy(A,tmp);
1144  MatrixMarket_IO::write(filename, tmp);
1145  }
1146 
1147  template<typename VEC> static void vecsave(std::string fname, const VEC& V,
1148  bool binary=false, std::string Vformat="") {
1149  if (binary) {
1150  std::ofstream f(fname.c_str(), std::ofstream::binary);
1151  for (size_type i=0; i < gmm::vect_size(V); ++i)
1152  f.write(reinterpret_cast<const char*>(&V[i]), sizeof(V[i]));
1153  }
1154  else {
1155  if (Vformat.empty()){
1156  std::ofstream f(fname.c_str()); f.imbue(std::locale("C"));
1157  f.precision(16);
1158  for (size_type i=0; i < gmm::vect_size(V); ++i) f << V[i] << "\n";
1159  }
1160  else {
1161  FILE* f = fopen(fname.c_str(), "w");
1162  for (size_type i=0; i < gmm::vect_size(V); ++i) fprintf(f, Vformat.c_str(), V[i]);
1163  fclose(f);
1164  }
1165  }
1166  }
1167 
1168  template<typename VEC> static void vecload(std::string fname, const VEC& V_,
1169  bool binary=false) {
1170  VEC &V(const_cast<VEC&>(V_));
1171  if (binary) {
1172  std::ifstream f(fname.c_str(), std::ifstream::binary);
1173  for (size_type i=0; i < gmm::vect_size(V); ++i)
1174  f.read(reinterpret_cast<char*>(&V[i]), sizeof(V[i]));
1175  }
1176  else {
1177  std::ifstream f(fname.c_str()); f.imbue(std::locale("C"));
1178  for (size_type i=0; i < gmm::vect_size(V); ++i) f >> V[i];
1179  }
1180  }
1181 }
1182 
1183 
1184 #endif // GMM_INOUTPUT_H
bgeot::size_type
size_t size_type
used as the common size type in the library
Definition: bgeot_poly.h:49
gmm::clear
void clear(L &l)
clear (fill with zeros) a vector or matrix.
Definition: gmm_blas.h:59
gmm::MatrixMarket_save
void MatrixMarket_save(const char *filename, const csc_matrix< T, IND_TYPE, shift > &A)
write a matrix-market file
Definition: gmm_inoutput.h:1042
gmm::MatrixMarket_IO
matrix input/output for MatrixMarket storage
Definition: gmm_inoutput.h:1003
gmm::resize
void resize(V &v, size_type n)
*‍/
Definition: gmm_blas.h:209
gmm::HarwellBoeing_IO::open
void open(const char *filename)
open filename and reads header
Definition: gmm_inoutput.h:272
gmm::HarwellBoeing_IO
matrix input/output for Harwell-Boeing format
Definition: gmm_inoutput.h:114
gmm::MatrixMarket_load
void MatrixMarket_load(const char *filename, Matrix &A)
load a matrix-market file
Definition: gmm_inoutput.h:1036
gmm_kernel.h
Include the base gmm files.
gmm::copy
void copy(const L1 &l1, L2 &l2)
*‍/
Definition: gmm_blas.h:977
gmm::Harwell_Boeing_load
void Harwell_Boeing_load(const std::string &filename, csc_matrix< T, IND_TYPE, shift > &A)
load a "double" or "std::complex<double>" csc matrix from a HarwellBoeing file
Definition: gmm_inoutput.h:635
gmm::Harwell_Boeing_save
void Harwell_Boeing_save(const std::string &filename, const csc_matrix< T, IND_TYPE, shift > &A)
save a "double" or "std::complex<double>" csc matrix into a HarwellBoeing file
Definition: gmm_inoutput.h:597
gmm::HarwellBoeing_IO::read
void read(csc_matrix< T, IND_TYPE, shift > &A)
read the opened file
Definition: gmm_inoutput.h:328

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